GenSpectrum
Inspect pathogen genomic data
About Us
An interactive platform to help scientists and public health professionals query and analyze pathogen
sequences. The core team is based at the cEvo group at ETH Zurich and at the Swiss Institute of Bioinformatics (SIB); in addition, we are grateful for our many contributors from around the globe: you can find our team here. We are funded by ETH Zurich, the US CDC's Office of Advanced Molecular Detection (OAMD) and NIH*) through the Pathogen Data Network.
*) This project is supported by the National Institute Of Allergy And Infectious Diseases of the
National Institutes of Health under Award Number U24AI183840. The content is solely the responsibility of the authors and does not necessarily represent the
official views of the National Institutes of Health.
Open Source Tooling
Pathogens
How to cite
If this dashboard has been useful for you, we would be grateful if you cite the following paper:
Chen, C., Nadeau, S., Yared, M., Voinov, P., Ning, X., Roemer, C. & Stadler, T. "CoV-Spectrum:
Analysis of globally shared SARS-CoV-2 data to Identify and Characterize New Variants" Bioinformatics
(2021); doi:
10.1093/bioinformatics/btab856
.
If you queried data through our LAPIS API, please consider citing:
Chen, C., Taepper, A., Engelniederhammer, F., Kellerer, J., Roemer, C. & Stadler, T. "LAPIS is a
fast web API for massive open virus sequencing data" Bioinformatics (2021); doi:
10.1186/s12859-023-05364-3
.
Contact
Feedback, suggestions, bug reports and active contributions are highly welcome, please create an issue in
our
Github repository
. For general questions, please contact Chaoran Chen (chaoran.chen@bsse.ethz.ch). For media requests, please
reach out to ETH Zurich Media Relations (mediarelations@hk.ethz.ch). A list of all team members can be found
here
.